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Benchmark dataset

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Reference protein data set

  • Description: Astral 2.06 with less than 40% identity
  • Number of sequences: 6,569
  • Average seq length: 185 aa
FASTA format
Download (1.8 MB)

Groups of structurally/functionally-related proteins at different SCOP levels:

Classes

  • Groups: 4
  • Avg # of proteins: 1649
  • Min # of proteins: 1072
  • Max # of proteins: 2478
Download (52.8 kB)

Folds

  • Groups: 219
  • Avg: 30
  • Min: 5
  • Max: 404
Download (54.3 kB)

Superfamilies

  • Groups: 282
  • Avg: 23
  • Min: 5
  • Max: 23
Download (55.4 kB)

Families

  • Groups: 513
  • Avg: 12
  • Min: 5
  • Max: 133
Download (58.5 kB)